A dumps of tables from the MGC track database are deposted every Wednesday
at 2 am EST at ftp-private.ncbi.nih.gov. The data is then
processed by mgcImport to create tab files used to load the
mgcStatus table. A script mgcDownload is
run by cron to download and process the data.
$gbRoot/data/mgc/$date/ - Directory containing MGC
data for download done on $date:
library.gz - MGC library table dump.
clone.gz - MGC clone table dump.
fullength.gz - MGC fullength table dump.
stage1.gz - MGC stage1 table dump.
table.descriptions - schema for mgc tables.
$gbRoot/processed/mgc/$date/ - Directory containing MGC
data generated from corresponding download directory.
mgcStatus.tab,gz - Tab file containing summerized
status information for all MGC clones, created locally by
mgcImport.
mgcFullStatus.tab.gz - Subset of mgcStatus.tab,gz
for the MGC full-CDS clones. This is used to load browsers that
will only have the full-CDS track. It is signficantly smaller than
the full table.
mgcFullStatus - Table containing status information about
full-CDS MGC clones.
mgcStatus - Table containing status information about
all MGC clones.
mgcFullMrna - PSL table of MGC full-length mRNAs.
mgcGenes - MGC full-length mRNAs with CDS annotation.
mgcIncompleteMrna - PSL table of MGC mRNAs which are
not full length or contain other errors.
mgcPickedEst - MGC ESTs that have been picked for sequences
or are in the sequencing pipeline.
mgcFailedEst - MGC ESTs where sequencing failed.
mgcUnpickedEst - ESTs from MGC libraries that have not
yet been picked for sequencing.